limix.plot.manhattan

limix.plot.manhattan(data, colora='#5689AC', colorb='#21334F', pts_kws=None, ax=None)

Produce a manhattan plot.

Parameters:
  • data (DataFrame, dict) – DataFrame containing the chromosome, base-pair positions, and p-values.
  • colora (matplotlib color) – Points color of the first group.
  • colorb (matplotlib color) – Points color of the second group.
  • pts_kws (dict, optional) – Keyword arguments forwarded to the matplotlib function used for plotting the points.
  • ax (matplotlib Axes, optional) – The target handle for this figure. If None, the current axes is set.
Returns:

ax – Axes object with the plot for further tweaking.
Return type:

matplotlib Axes

Examples

(Source code, png)

../_images/limix-plot-manhattan-1.png