Limix’s documentation

Date:Oct 14, 2018 Version:2.0.0a3

Table of contents

• Installation
• Command line interface
  • Introduction
  • Kinship
  • Plink BED format
  • BIMBAM file formats
  • HDF5
  • CSV
  • Image
  • GWAS
• I/O module
  • BGEN reader
  • CSV reader
  • HDF5 reader
  • NumPy reader
  • PLINK reader
• Heritability estimation
  • Heritability
• Quality control
  • Box-Cox
  • Dependent columns
  • Genotype
  • Impute
  • Kinship
  • Normalisation
  • Regression
• Quantitative trait locus
  • Introduction
  • Interface
• Shell utilities
• Statistics
  • Statistics
• Tutorials
  • eQTL
  • Variance decomposition
• API reference
  • I/O module
  • Quality control
  • Statistics
  • Heritability estimation
  • Quantitative trait loci
  • Plotting & Graphics
  • Generalised Linear Mixed Models
  • Shell utilities
• Developers
  • Data type

Comments and bugs

You can get the source and open issues on Github.